Publikace v impaktovaných časopisech s poděkováním projektu excelence

Orlova DY, Stixová L, Kozubek S, Gierman HJ, Sustáčková G, Chernyshev AV, Medvedev RN, Legartová S, Versteeg R, Matula P, Stoklasa R, Bártová E. Arrangement of nuclear structures is not transmitted through mitosis but is identical in sister cells. J Cell Biochem. 2012; 10.1002/jcb.24208.

Foltankova V, Legartova S, Kozubek S, Bartova E. Tumor-specific histone signature and DNA methylation in multiple myeloma and leukemia cells. Neoplasma. 2012;59(4):450-62.

Stixová L, Matula P, Kozubek S, Gombitová A, Cmarko D, Raška I, Bártová E. Trajectories and nuclear arrangement of PML bodies are influenced by A-type lamin deficiency. Biol Cell. 2012; 104(7):418-32.

Legartová S, Jugová A, Stixová L, Kozubek S, Fojtová M, Zdráhal Z, Lochmanová G, and Bártová E. Epigenetic aspects of HP1 exchange kinetics in apoptotic chromatin. Submitted 2012.

Rotrekl V, Balek L, Krutá M, Hejnová R, Kunická Z, Eiselleová L, Matulka K, Bárta T, Koudelková K, Fajkus J, Hampl A, Dvořák P. Decrease in abundance of apurinic/apyrimidinic endonuclease causes failure of base excision repair in culture-adapted human embryonic stem cells. Stem Cells. Submitted 2012.

Vařecha M, Páclová D, Procházková J, Matula Pa, Cmarko D, Kozubek M. Knockdown of apoptosis-inducing factor disrupts function of respiratory complex I. Biocell. 2012. Accepted.

Daněk O, Matula Pa a Maška M, Kozubek M. Smooth Chan-Vese Segmentation via Graph Cuts. Pattern Recognition Letters, Amsterdam: Elsevier, 33, 10, od s. 1405-1410, 2012. in press.

Štěpánek M, Škvarla J, Uchman M, Procházka K, Angelov B, Kováčik L, Garamus VM, Mantzaridis C, Pispas S. Wormlike core-shell nanoparticles formed byco-assembly of double hydrophilic block polyelectrolyte with oppositelycharged fluorosurfactant. Soft Matter. 2012; 8(36):9412-17.

Sarova I, Brezinova J, Zemanova Z, Bystricka D, Krejcik Z, Soukup P, Vydra J, Cermak J, Jonasova A, Michalova K:  Characterization of chromosome 11 breakpoints and the areas of deletion and amplification in patients with newly diagnosed acute myeloid leukemia. Odesláno do Genes, Chromosomes and Cancer (po revizi).

Šmigová J. Juda, Bártová E., Raška I. Dynamics of Polycomb chromatin domains under conditions of increased molecular crowding. Accepted in Biology of the Cell, 2013.

Legartová S., Stixová L., Strnad H., Kozubek S., Martinet N., Dekker FJ, Franek M., Bártová E. Basic nuclear processes affected by HAT and HDAC inhibitors. Epigenomics, 2013, 5(4):379-96.

Přikrylová T., Pacherník J., Kozubek S., Bártová E. Epigenetics and chromatin plasticity in embryonic stem cells. World Journal of Stem Cells, 5(3): 73-85. Review. (v databázi PubMed)

Popov A, Smirnov E, Kováčik L, Raška O, Hagen G, Stixová L, Raška I. Duration of the first steps of the human rRNA processing. Nucleus. 2013 Mar-Apr;4(2):134-41. (v databázi PubMed)

Foltánková V, Legartová S, Kozubek S, Hofer M, Bártová E. DNA-damage response in chromatin of ribosomal genes and the surrounding genome. Gene. 2013, 15;522(2):156-67.

Legartová S., Stixová L., Laur O., Kozubek S., Sehnalová P., Bártová E. Nuclear structures surrounding internal lamin invaginations. Accepted in Journal of Cellular Biochemistry, 2013.

Karas P., Svoboda D. Algorithms for Efficient Computation of Convolution. In Design and Architectures for Digital Signal Processing. 1st ed. Rijeka (CRO): InTech, 2013. s. 179-208.
RIV: Kapitola v odborné knize.

Foltánková V., Matula P., Sorokin D., Kozubek S.,Bártová E. Hybrid detectors improved time-lapse confocal microscopy of PML and 53BP1 nuclear body co-localization in DNA lesions. Microscopy and Microanalysis, Saarbrücken: Cambridge University Press, 2013, Volume 19, Issue 2, s. 360-369.
 
Svoboda D., Ulman V. Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy. In Campilho, Aurélio; Kamel, Mohamed. Proceedings of 9th International Conference on Image Analysis and Recognition. LNCS 7325, Part II. Heidelberg: Springer-Verlag, 2012. s. 473-482, 10 s.

Karas P., Svoboda D., Zemčík P. GPU Optimization of Convolution for Large 3-D Real Images. In Blanc-Talon, Jacques and Philips, Wilfried and Popescu, Dan and Scheunders, Paul and Zemcík, Pavel. Proceedings of the International Conference on Advanced Concepts for Intelligent Vision Systems (ACIVS'12). Springer Berlin / Heidelberg, 2012. s. 59-71, 13 s.

Serva A.,Knapp B., Tsai Y-T., Class Ch., Lisauskas T., Matula P., Harder N., Kederali L., Rohp K., Erfle H., Eils R., Braga V., Starkuviene V. miR-17-5p Regulates Endocytic Trafficking through Targeting TBC1D2/Armus. PLoS One, 2012, roč. 7, č. 12, s. e52555.

Brezinova J., Sarova I., Buryova H., Markova J., Ransdorfova Š, Izakova S., Kostylkova K., Soukupova J., Zemanova Z., Michalova K. Fusion of the ASXL1 (additional sex combs like 1) and TSHZ2 (teashirt zinc finger homeobox 2) genes resulting from ider(20q) aberration in a patient with myelodysplastic syndrome. Přijato do časopisu British Journal of Haematology

Ježková L, Falk M, Falková I, Davídková M, Bačíková A, Stefančíková L, Vachelová J, Michaelidesová A, Lukášová E, Boreyko A, Krasavin E, Kozubek S. Function of chromatin structure and dynamics in DNA damage, repair and misrepair: γ-rays and protons in action. Appl Radiat Isot. 2013 Jan 20.

Lukášová E, Kořistek Z, Klabusay M, Ondřej V, Grigoryev S, Bačíková A, Řezáčová M, Falk M, Vávrová J, Kohútová V, Kozubek S. Granulocyte maturation determines ability to release chromatin NETs and loss of DNA damage response; these properties are absent in immature AML granulocytes. Biochim Biophys Acta. 2013 Mar;1833(3):767-79.

Sevcik J, Falk M, Macurek L, Kleiblova P, Lhota F, Hojny J, Stefancikova L, Janatova M, Bartek J, Stribrna J, Hodny Z, Jezkova L, Pohlreich P, Kleibl Z. Expression of human BRCA1Δ17-19 alternative splicing variant with a truncated BRCT domain in MCF-7 cells results in impaired assembly of DNA repair complexes and aberrant DNA damage response. Cell Signal. 2013 May;25(5):1186-93.

Lanctôt C, Meister P. Microscopic analysis of chromatin localization and dynamics in C. elegans. Methods Molecular Biology 2013;1042:153-72